Gwyddion – Free SPM (AFM, SNOM/NSOM, STM, MFM, …) data analysis software

Module List

Other available formats: French, Russian, English with dynamic pop-ups.

NameVersionAuthors
accurexii-txt1.0Yeti
acf2d1.1Yeti
aistfile0.5.1Yeti
alicona0.2Yeti
ambfile0.3Yeti
anfatec0.2Yeti
angle_dist1.9Yeti
apedaxfile0.8Andrea Cervesato, Gianfranco Gallizia, Samo Ziberna
apefile0.12Yeti
arithmetic3.6Yeti
asciiexport1.4Yeti
assing-afm0.17Yeti
attocube0.3Yeti
averaging0.2Daniil Bratashov
axis2.7Yeti
basicops1.9Yeti
bcrfile0.16Yeti
bdep_synth1.2Yeti
burleigh0.6Yeti
burleigh_bii0.3Jan Hořák, Yeti
burleigh_exp0.2Yeti
calcoefs_load1.1Petr Klapetek
calcoefs_new1.0Petr Klapetek
calcoefs_simple1.0Petr Klapetek
calcoefs_view1.0Petr Klapetek
calibrate2.16Petr Klapetek
codevfile0.3Yeti
coerce1.0Yeti
col_synth1.5Yeti
convolution_filter1.6Yeti
correct_affine2.0Yeti
createc1.2Rok Zitko
crop2.10Yeti
crosscor1.11Petr Klapetek
csmfile0.3Yeti
curvature1.5Yeti
cwt1.6Petr Klapetek
dektakvca0.1Yeti
dektakxml0.1Yeti
deposit_synth1.5Petr Klapetek
diff_synth1.1Yeti
dimensionfile0.1Yeti
distance2.14Nenad Ocelic
dm3file2.0Yeti
dmefile0.5Yeti
domain_synth1.0Yeti
drift3.2Petr Klapetek, Yeti
dumbfile1.2Yeti
dwt1.7Petr Klapetek
dwtanisotropy1.8Petr Klapetek
ecsfile0.7Yeti
edge1.14Petr Klapetek
ellipse1.7Yeti
entropy1.1Yeti
extend1.3Yeti
extract_path1.0Yeti
ezdfile0.9Yeti
facet-level2.5Yeti
facet_analysis1.11Yeti
fbm_synth1.1Yeti
femtoscan1.0Yeti
femtoscan-txt0.1Yeti
fft2.2Petr Klapetek
fft_filter_1d2.8Petr Klapetek
fft_filter_2d1.11Chris Anderson
fft_profile1.4Yeti
fft_synth1.6Yeti
fibre_synth1.0Yeti
filter3.13Petr Klapetek
fit-shape1.3Yeti
fitsfile1.0Yeti
flatten_base1.0Yeti
fraccor1.3Petr Klapetek
fractal1.9Jindřich Bilek & Petr Klapetek
gdeffile0.3Yeti
gradient1.6Petr Klapetek
grain_cross2.2Yeti
grain_dist4.3Petr Klapetek, Sven Neumann, Yeti
grain_edge0.5Daniil Bratashov
grain_filter1.2Yeti
grain_mark1.20Petr Klapetek
grain_stat1.1Petr Klapetek, Sven Neumann, Yeti
grain_wshed1.18Petr Klapetek
grainmeasure1.6Yeti
grainremover3.5Petr Klapetek, Yeti
graph_align1.2Yeti
graph_cd2.4Petr Klapetek
graph_cut1.3Petr Klapetek
graph_dos_spectrum0.1Daniil Bratashov
graph_export_ascii2.0Petr Klapetek
graph_export_bitmap1.2Petr Klapetek
graph_export_vector1.2Petr Klapetek
graph_fdfit1.5Petr Klapetek
graph_filter0.3Daniil Bratashov
graph_fit2.10Petr Klapetek
graph_level1.4Petr Klapetek
graph_logscale1.0Yeti
graph_peaks1.3Yeti
graph_stats1.0Yeti
gsffile1.2Yeti
gwyfile0.18Yeti
gxyzffile2.0Yeti
hdf4file0.7Yeti
hdrimage2.2Yeti
hitachi-afm0.7Yeti
hitachi-sem0.2Yeti
hough1.3Petr Klapetek
icolorange3.17Yeti
igorfile0.10Yeti
imgexport2.4Yeti
immerse2.6Petr Klapetek
indent_analyze0.1.5Lukáš Chvátal
intelliwave0.1Yeti
intematix0.4Yeti
iso286000.4Yeti
jeol0.8Yeti
jpkscan0.10Sven Neumann, Yeti
jspmfile0.2Yeti
keyence1.1Yeti
laplace2.0Petr Klapetek
lat_synth1.2Yeti
latsim1.2Petr Klapetek
lattice1.0Yeti
leica0.2Daniil Bratashov
level2.0Yeti
level32.8Yeti
level_grains1.3David Nečas
lextfile0.5Yeti
line3.5Yeti
linecorrect1.10Yeti, Luke Somers
linematch1.5Yeti
linestats2.0Yeti
lno_synth1.4Yeti
local_contrast1.4Yeti
logistic0.3Daniil Bratashov
magellan1.2Yeti
mapvue0.4Yeti
mark_disconn1.4Yeti
mark_with1.5Yeti
mask_distribute1.0Yeti
mask_edt2.2Yeti
mask_morph1.1Yeti
mask_noisify1.0Yeti
maskcor1.9Petr Klapetek
maskedit3.11Yeti
maskops1.5Yeti
mcrop0.4Daniil Bratashov
measure_lattice2.0Yeti
median-bg1.6Yeti
merge3.2Petr Klapetek, Yeti
metropro1.2Yeti
mfm_current1.1Petr Klapetek
mfm_field1.1Petr Klapetek
mfm_findshift1.1Petr Klapetek
mfm_parallel1.1Petr Klapetek
mfm_shift1.0Petr Klapetek
microprof0.6Yeti
miffile0.3Yeti
mifile0.16Chris Anderson
mulfile0.2Yeti
nanoeducator0.6Yeti
nanomagnetics1.2Sameer Grover
nanonics0.4Yeti
nanonis1.1Yeti
nanoobserver2.0Yeti
nanoscan0.7Yeti
nanoscantech0.12Daniil Bratashov (dn2010@gmail.com)
nanoscope0.35Yeti
nanoscope-ii0.3Yeti
nanotop1.9Alexander Kovalev
netcdf0.8Yeti
neural2.3Petr Klapetek
nmmxyz1.2Yeti
noise_synth1.3Yeti
nrrdfile0.6Yeti
nt-mdt0.23Yeti
nxiifile1.0Yeti
obj_synth1.8Yeti
oldmda0.3dn2010
ols0.11Jan Hořák, Yeti
ometiff1.1Yeti
omicron0.14Yeti
omicronflat2.2Yeti
omicronmatrix0.84Philipp Rahe
opdfile0.11Yeti
opengps1.3Yeti
otsu_threshold1.2Vinicius Barboza
outliers1.5Petr Klapetek
pat_synth1.6Yeti
path1.0Yeti
pathlevel1.9Yeti
phase_synth1.1Yeti
pid1.1Petr Klapetek
pixmap8.0Yeti
pltfile0.2Yeti
plugin-proxy3.9Yeti
pnifile0.7Yeti
point3.2Yeti
polydistort1.5Yeti
polylevel3.3Yeti
presentationops1.9Yeti
princetonspe0.1Yeti
profile4.0Petr Klapetek
psdf_logphi1.1Yeti
psf1.1Petr Klapetek
psf-fit1.1Yeti
psia0.7Yeti
pt3file0.2Yeti
pygwy2.3Jan Hořák, Yeti
quesant0.5Jan Hořák, Yeti
rank2.2Yeti
rawfile2.10Yeti
rawgraph0.5Yeti
rawxyz3.1Yeti
readvalue2.14Yeti
rectangle2.9Yeti
renishaw0.9Daniil Bratashov
rhk-sm30.15Yeti
rhk-sm40.7Yeti
rhk-spm320.11Yeti
robotics0.2Mira
rotate2.2Yeti
roughness1.15Martin Hasoň, Yeti
s94file1.1Yeti
scale1.8Yeti
scars1.15Yeti
sdfile0.12Yeti
seiko0.13Yeti
selectionmanager2.0Yeti
semsim1.1Yeti
sensofar0.4Jan Hořák, Yeti
sensofarx1.0Yeti
sensolytics0.2Yeti
sfunctions2.18Petr Klapetek
shade2.6Petr Klapetek
shimadzu0.6Yeti
sicmfile1.3Matthew Caldwell
sis0.17Yeti
slope_dist2.3Yeti
spectro0.11Owain Davies
sphere-revolve2.0Yeti
spip-asc0.5Yeti
spml0.1.6Jan Hořák
spmlab0.12Yeti
spmlabf0.4Yeti
spmxfile1.1Yeti
spotremove2.8Yeti
stats2.18Petr Klapetek
stitch2.48Petr Grolich
stmprg0.12Rok Zitko, Yeti
stpfile0.5.2Yeti
straighten_path1.1Yeti
surffile0.11Petr Klapetek
tescan1.1Yeti
threshold1.5Yeti
tiaser0.4dn2010
tilt1.2Yeti
tip_blind1.9Petr Klapetek
tip_model2.1Petr Klapetek
tipops1.3Petr Klapetek, Yeti
unisoku0.9Yeti
unrotate2.6Yeti
volume_calibrate1.2Petr Klapetek
volume_extract1.2Petr Klapetek
volume_fdfit1.1Petr Klapetek
volume_invert1.1Petr Klapetek
volume_kmeans1.5Daniil Bratashov & Evgeniy Ryabov
volume_kmedians1.2Daniil Bratashov & Evgeniy Ryabov
volume_linestat1.2Yeti
volume_slice2.3Yeti
volume_swaxes1.0Yeti
volume_zcal1.0Yeti
volumeops1.1Yeti
volumize1.2Petr Klapetek
volumize_layers2.1Petr Klapetek
vtkfile1.0Yeti
wave_synth1.2Yeti
win_stm0.5Jeffrey J. Schwartz
wipfile0.8Daniil Bratashov
witec-asc0.2Yeti
witfile0.7Yeti
wpour_mark1.1Yeti
wsffile0.4Yeti
wsxmfile0.16Yeti
xydenoise1.3Petr Klapetek
xyz_drift1.0Petr Klapetek
xyz_level1.0Yeti
xyz_raster1.1Yeti
xyzexport2.0Yeti
xyzize1.2Yeti
zeiss0.6Yeti
zeisslsm0.3Daniil Bratashov
zemax1.1Yeti

accurexii-txt

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Imports Accurex II text files. (User guide)

Functions
TypeNameInformation
fileaccurexii-txtAccurex II text files (.txt)

acf2d

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2007

Description: Calculates two-dimensional autocorrelation function. (User guide)

Functions
TypeNameInformation
procacf2dStatistics → 2D Autocorrelation

aistfile

Version: 0.5.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports AIST-NT data files. (User guide)

Functions
TypeNameInformation
fileaistfileAIST-NT files (.aist)

alicona

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports Alicona Imaging AL3D files. (User guide)

Functions
TypeNameInformation
filealiconaAlicona Imaging AL3D files (.al3d)

ambfile

Version: 0.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports Ambios AMB data files. (User guide)

Functions
TypeNameInformation
fileambfileAmbios amb files (.amb)

anfatec

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2010

Description: Imports Anfatec data files (two-part .txt + .int). (User guide)

Functions
TypeNameInformation
fileanfatecAnfatec files (.par + .int)

angle_dist

Version: 1.9
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Calculates two-dimensional distribution of angles, that is projections of slopes to all directions. (User guide)

Functions
TypeNameInformation
procangle_distStatistics → Angle Distribution

apedaxfile

Version: 0.8
Authors: Andrea Cervesato, Gianfranco Gallizia, Samo Ziberna
Copyright: A.P.E. Research srl 2015

Description: Imports A.P.E. Research DAX data files. (User guide)

Functions
TypeNameInformation
fileapedaxfileA.P.E. Research DAX Files (.dax) and APDT File (.apdt)

apefile

Version: 0.12
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports APE (Applied Physics and Engineering) data files. (User guide)

Functions
TypeNameInformation
fileapefileAPE files (.dat)

arithmetic

Version: 3.6
Authors: Yeti
Copyright: David Nečas (Yeti) 2004

Description: Simple arithmetic operations with data fields. (User guide)

Functions
TypeNameInformation
procarithmeticMultidata → Arithmetic

asciiexport

Version: 1.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2004

Description: Exports data as simple ASCII matrix. (User guide)

Functions
TypeNameInformation
fileasciiexportASCII data matrix (.txt)

assing-afm

Version: 0.17
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports Assing AFM data files. (User guide)

Functions
TypeNameInformation
fileassing-afmAssing AFM files (.afm)

attocube

Version: 0.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports Attocube Systems ASC files. (User guide)

Functions
TypeNameInformation
fileattocubeAttocube ASCII files (.asc)

averaging

Version: 0.2
Authors: Daniil Bratashov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov 2011

Description: Similar structures averaging using autocorrelation

Functions
TypeNameInformation
procaveragingCorrect Data → Correlation Averaging

axis

Version: 2.7
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Layer allowing selection of horizontal or vertical lines. (User guide)

Functions
TypeNameInformation
layerGwyLayerAxis

basicops

Version: 1.9
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Basic operations like flipping, value inversion, and rotation by multiples of 90 degrees. (User guide)

Functions
TypeNameInformation
procinvert_valueBasic Operations → Invert Value
procflip_horizontallyBasic Operations → Flip Horizontally
procflip_verticallyBasic Operations → Flip Vertically
procrotate_180Basic Operations → Flip Both
procrotate_90_cwBasic Operations → Rotate Clockwise
procrotate_90_ccwBasic Operations → Rotate Counterclockwise
procsquare_samplesBasic Operations → Square Samples
procnull_offsetsBasic Operations → Null Offsets

bcrfile

Version: 0.16
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports Image Metrology BCR data files. (User guide)

Functions
TypeNameInformation
filebcrfileBCR files (.bcr, .bcrf)

bdep_synth

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Generates surfaces by ballistic deposition. (User guide)

Functions
TypeNameInformation
procbdep_synthSynthetic → Deposition → Ballistic

burleigh

Version: 0.6
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek & Hans-Peter Doerr 2006

Description: Imports Burleigh IMG data files version 2.1. (User guide)

Functions
TypeNameInformation
fileburleighBurleigh 2.1 files (.img)

burleigh_bii

Version: 0.3
Authors: Jan Hořák, Yeti
Copyright: Jan Hořák & David Nečas (Yeti) & Petr Klapetek 2008

Description: Imports Burleigh BII binary data files. (User guide)

Functions
TypeNameInformation
fileburleigh_biiBurleigh Image Studio files (.bii)

burleigh_exp

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2007

Description: Imports Burleigh text/bin exported images. (User guide)

Functions
TypeNameInformation
fileburleigh_expBurleigh exported data (.txt, .bin)

calcoefs_load

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2010

Description: Load calibration data from text file (User guide)

Functions
TypeNameInformation
proccloadCalibration → Load From Text File

calcoefs_new

Version: 1.0
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2010

Description: Create simple calibration data (User guide)

Functions
TypeNameInformation
proccnewCalibration → Create

calcoefs_simple

Version: 1.0
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2010

Description: Simple error map based on grating measurements (User guide)

Functions
TypeNameInformation
procsimpleCalibration → Get Simple Errop Map

calcoefs_view

Version: 1.0
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2010

Description: 3D calibration/uncertainty (User guide)

Functions
TypeNameInformation
proccc_viewCalibration → Apply to Data

calibrate

Version: 2.16
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Recalibrates scan lateral dimensions or value range. (User guide)

Functions
TypeNameInformation
proccalibrateBasic Operations → Dimensions and Units

codevfile

Version: 0.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports Code V interferogram files. (User guide)

Functions
TypeNameInformation
filecodevfileCode V interferogram files (.int)

coerce

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Transforms surfaces to have prescribed statistical properties. (User guide)

Functions
TypeNameInformation
proccoerceSynthetic → Coerce

col_synth

Version: 1.5
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Generates columnar surfaces by a simple growth algorithm. (User guide)

Functions
TypeNameInformation
proccol_synthSynthetic → Deposition → Columnar

convolution_filter

Version: 1.6
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Generic convolution filter with a user-defined matrix. (User guide)

Functions
TypeNameInformation
procconvolution_filterIntegral Transforms → Convolution Filter

correct_affine

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2013

Description: Corrects affine distortion of images by matching image Bravais lattice to the true one. (User guide)

Functions
TypeNameInformation
proccorrect_affineDistortion → Affine

createc

Version: 1.2
Authors: Rok Zitko
Copyright: Rok Zitko, David Nečas (Yeti) 2004

Description: Imports Createc data files. (User guide)

Functions
TypeNameInformation
filecreatecCreatec files (.dat)

crop

Version: 2.10
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Crop tool, crops data to smaller size. (User guide)

Functions
TypeNameInformation
toolGwyToolCropCrop data

crosscor

Version: 1.11
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Calculates cross-correlation of two data fields. (User guide)

Functions
TypeNameInformation
proccrosscorMultidata → Cross-Correlation

csmfile

Version: 0.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports Benyuan CSM data files. (User guide)

Functions
TypeNameInformation
filecsmfileBenyuan CSM files (.csm)

curvature

Version: 1.5
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Calculates overall curvature. (User guide)

Functions
TypeNameInformation
proccurvatureLevel → Curvature

cwt

Version: 1.6
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Two-dimensional CWT (Continuous Wavelet Transform). (User guide)

Functions
TypeNameInformation
proccwtIntegral Transforms → 2D CWT

dektakvca

Version: 0.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2017

Description: Imports Dektak OPDx data files. (User guide)

Functions
TypeNameInformation
filedektakvcaDektak OPDx data files (.OPDx)

dektakxml

Version: 0.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Imports Dektak XML data files. (User guide)

Functions
TypeNameInformation
filedektakxmlDektak XML data files (.xml)

deposit_synth

Version: 1.5
Authors: Petr Klapetek
Copyright: Petr Klapetek 2010

Description: Generates particles using simple dynamical model (User guide)

Functions
TypeNameInformation
procdeposit_synthSynthetic → Deposition → Particles

diff_synth

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Generates surfaces by diffusion limited aggregation. (User guide)

Functions
TypeNameInformation
procdiff_synthSynthetic → Deposition → Diffusion

dimensionfile

Version: 0.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Imports old Veeco Dimension 3100D files. (User guide)

Functions
TypeNameInformation
filedimensionfileDimension 3100D files (.001, .002, ...)

distance

Version: 2.14
Authors: Nenad Ocelic
Copyright: Nenad Ocelic & David Nečas (Yeti) & Petr Klapetek 2004

Description: Distance measurement tool, measures distances and angles. (User guide)

Functions
TypeNameInformation
toolGwyToolDistanceMeasure distances and directions between points

dm3file

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2012

Description: Reads Digital Micrograph DM3 and DM4 files. (User guide)

Functions
TypeNameInformation
filedm3fileDigital Micrograph DM3 TEM data (.dm3)
filedm4fileDigital Micrograph DM4 TEM data (.dm4)

dmefile

Version: 0.5
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports Danish Micro Engineering (DME) data files. (User guide)

Functions
TypeNameInformation
filedmefileDME files (.img)

domain_synth

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Generates domain images using a hybrid Ising model. (User guide)

Functions
TypeNameInformation
procdomain_synthSynthetic → Domains

drift

Version: 3.2
Authors: Petr Klapetek, Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2007

Description: Evaluates and/or correct thermal drift in fast scan axis. (User guide)

Functions
TypeNameInformation
procdriftDistortion → Compensate Drift

dumbfile

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Reads and exports Gwyddion dumb dump files. (User guide)

Functions
TypeNameInformation
filedumbfileGwyddion dumb dump files (.dump)

dwt

Version: 1.7
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Two-dimensional DWT (Discrete Wavelet Transform). (User guide)

Functions
TypeNameInformation
procdwtIntegral Transforms → 2D DWT

dwtanisotropy

Version: 1.8
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: 2D DWT anisotropy detection based on X/Y components ratio. (User guide)

Functions
TypeNameInformation
procdwtanisotropyIntegral Transforms → DWT Anisotropy

ecsfile

Version: 0.7
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek & Markus Pristovsek 2006

Description: Imports ECS IMG files. (User guide)

Functions
TypeNameInformation
fileecsfileECS files (.img)

edge

Version: 1.14
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Several edge detection methods (Laplacian of Gaussian, Canny, and some experimental), creates presentation. (User guide)

Functions
TypeNameInformation
procedge_laplacianPresentation → Edge Detection → Laplacian of Gaussian
procedge_cannyPresentation → Edge Detection → Canny
procedge_rmsPresentation → Edge Detection → RMS
procedge_rms_edgePresentation → Edge Detection → RMS Edge
procedge_nonlinearityPresentation → Edge Detection → Local Nonlinearity
procedge_hough_linesPresentation → Edge Detection → Hough Lines
procedge_harrisPresentation → Edge Detection → Harris Corner
procedge_inclinationPresentation → Edge Detection → Inclination
procedge_stepPresentation → Edge Detection → Step
procedge_sobelPresentation → Edge Detection → Sobel
procedge_prewittPresentation → Edge Detection → Prewitt
procedge_zero_crossingPresentation → Edge Detection → Zero Crossing
procslope_mapIntegral Transforms → Local Slope

ellipse

Version: 1.7
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Layer allowing selection of elliptic areas. (User guide)

Functions
TypeNameInformation
layerGwyLayerEllipse

entropy

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Visualizes entropy calculation for value and slope distribution. (User guide)

Functions
TypeNameInformation
procentropyStatistics → Entropy

extend

Version: 1.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2012

Description: Extends image by adding borders. (User guide)

Functions
TypeNameInformation
procextendBasic Operations → Extend

extract_path

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Extracts coordinates and tangents along a path selection. (User guide)

Functions
TypeNameInformation
procextract_pathDistortion → Extract Path Selection

ezdfile

Version: 0.9
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports Nanosurf EZD and NID data files. (User guide)

Functions
TypeNameInformation
fileezdfileNanosurf files (.ezd, .nid)

facet-level

Version: 2.5
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Automatic facet-orientation based leveling. Levels data to make facets point up. (User guide)

Functions
TypeNameInformation
procfacet-levelLevel → Facet Level

facet_analysis

Version: 1.11
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Visualizes, marks and measures facet orientation. (User guide)

Functions
TypeNameInformation
procfacet_analysisStatistics → Facet Analysis

fbm_synth

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Generates random surfaces similar to fractional Brownian motion. (User guide)

Functions
TypeNameInformation
procfbm_synthSynthetic → Brownian

femtoscan

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Imports FemtoScan SPM data files. (User guide)

Functions
TypeNameInformation
filefemtoscanFemtoScan SPM files

femtoscan-txt

Version: 0.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Imports FemtoScan TXT files. (User guide)

Functions
TypeNameInformation
filefemtoscan-txtFemtoScan text files (.txt)

fft

Version: 2.2
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Two-dimensional FFT (Fast Fourier Transform). (User guide)

Functions
TypeNameInformation
procfftIntegral Transforms → 2D FFT

fft_filter_1d

Version: 2.8
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: FFT filtering (User guide)

Functions
TypeNameInformation
procfft_filter_1dCorrect Data → 1D FFT Filtering

fft_filter_2d

Version: 1.11
Authors: Chris Anderson
Copyright: Chris Anderson, Molecular Imaging Corp. 2005

Description: 2D FFT Filtering (User guide)

Functions
TypeNameInformation
procfft_filter_2dCorrect Data → 2D FFT Filtering

fft_profile

Version: 1.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Reads radial sections of two-dimensional power spectrum density function. (User guide)

Functions
TypeNameInformation
procfft_profileStatistics → PSDF Section

fft_synth

Version: 1.6
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Generates random surfaces using spectral synthesis. (User guide)

Functions
TypeNameInformation
procfft_synthSynthetic → Spectral

fibre_synth

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2017

Description: Generates surfaces composed from randomly placed fibers. (User guide)

Functions
TypeNameInformation
procfibre_synthSynthetic → Deposition → Fibers

filter

Version: 3.13
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Filter tool, processes selected part of data with a filter (conservative denoise, mean, median. Kuwahara, minimum, maximum). (User guide)

Functions
TypeNameInformation
toolGwyToolFilterBasic filters: mean, median, denoise, …

fit-shape

Version: 1.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Fits predefined geometrical shapes to data. (User guide)

Functions
TypeNameInformation
procfit_shapeLevel → Fit Shape
xyzxyz_fit_shape

fitsfile

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Reads Flexible Image Transport System (FITS) files. (User guide)

Functions
TypeNameInformation
filefitsfileFlexible Image Transport System FITS (.fits)

flatten_base

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Levels the flat base of a surface with positive features. (User guide)

Functions
TypeNameInformation
procflatten_baseLevel → Flatten Base

fraccor

Version: 1.3
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Removes data under mask using fractal interpolation. (User guide)

Functions
TypeNameInformation
procfraccorCorrect Data → Fractal Correction

fractal

Version: 1.9
Authors: Jindřich Bilek & Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek & Jindřich Bílek 2004

Description: Calculates fractal dimension using several methods (partitioning, box counting, triangulation, power spectrum). (User guide)

Functions
TypeNameInformation
procfractalStatistics → Fractal Dimension

gdeffile

Version: 0.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2010

Description: Imports DME GDEF data files. (User guide)

Functions
TypeNameInformation
filegdeffileDME GDEF files (.gdf)

gradient

Version: 1.6
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Creates presentations with various gradients (Sobel, Prewitt). (User guide)

Functions
TypeNameInformation
procsobel_horizontalPresentation → Gradient → Sobel (horizontal)
procsobel_verticalPresentation → Gradient → Sobel (vertical)
procprewitt_horizontalPresentation → Gradient → Prewitt (horizontal)
procprewitt_verticalPresentation → Gradient → Prewitt (vertical)
procazimuthPresentation → Gradient → Azimuth

grain_cross

Version: 2.2
Authors: Yeti
Copyright: David Nečas 2007

Description: Plots one grain quantity as a function of another. (User guide)

Functions
TypeNameInformation
procgrain_crossGrains → Correlate

grain_dist

Version: 4.3
Authors: Petr Klapetek, Sven Neumann, Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek & Sven Neumann 2003

Description: Evaluates distribution of grains (continuous parts of mask). (User guide)

Functions
TypeNameInformation
procgrain_distGrains → Distributions

grain_edge

Version: 0.5
Authors: Daniil Bratashov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov 2011

Description: Marks grains by edge detection method. (User guide)

Functions
TypeNameInformation
procgrain_edgeGrains → Mark by Edge Detection

grain_filter

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Filters grains by their properties, using logical expressions and thresholds. (User guide)

Functions
TypeNameInformation
procgrain_filterGrains → Filter

grain_mark

Version: 1.20
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Marks grains by thresholding (height, slope, curvature). (User guide)

Functions
TypeNameInformation
procgrain_markGrains → Mark by Threshold

grain_stat

Version: 1.1
Authors: Petr Klapetek, Sven Neumann, Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek & Sven Neumann 2015

Description: Displays overall grain statistics. (User guide)

Functions
TypeNameInformation
procgrain_statGrains → Statistics
procgrain_inscribe_discsGrains → Select Inscribed Discs
procgrain_exscribe_circlesGrains → Select Circumscribed Circles

grain_wshed

Version: 1.18
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Marks grains by watershed algorithm. (User guide)

Functions
TypeNameInformation
procgrain_wshedGrains → Mark by Watershed

grainmeasure

Version: 1.6
Authors: Yeti
Copyright: David Nečas (Yeti) 2007

Description: Grain measurement tool, calculates characteristics of selected continuous parts of mask. (User guide)

Functions
TypeNameInformation
toolGwyToolGrainMeasureMeasure individual grains (continuous parts of mask)

grainremover

Version: 3.5
Authors: Petr Klapetek, Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Grain removal tool, removes continuous parts of mask and/or underlying data. (User guide)

Functions
TypeNameInformation
toolGwyToolGrainRemoverRemove individual grains (continuous parts of mask)

graph_align

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Aligns graph curves. (User guide)

Functions
TypeNameInformation
graphgraph_alignAlign

graph_cd

Version: 2.4
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Critical dimension measurements (User guide)

Functions
TypeNameInformation
graphgraph_cdCritical Dimension

graph_cut

Version: 1.3
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2007

Description: Cut graph (User guide)

Functions
TypeNameInformation
graphgraph_cutCut

graph_dos_spectrum

Version: 0.1
Authors: Daniil Bratashov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov 2010

Description: DOS Spectrum (User guide)

Functions
TypeNameInformation
graphdos_spectrumDOS Spectrum

graph_export_ascii

Version: 2.0
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Exports graph data to text files. (User guide)

Functions
TypeNameInformation
graphgraph_export_asciiExport Text

graph_export_bitmap

Version: 1.2
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Export graph into bitmap (User guide)

Functions
TypeNameInformation
graphgraph_export_bitmapExport Bitmap

graph_export_vector

Version: 1.2
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Exports graphs to PostScript (User guide)

Functions
TypeNameInformation
graphgraph_export_vectorExport PostScript

graph_fdfit

Version: 1.5
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2007

Description: Fit force-distance data (User guide)

Functions
TypeNameInformation
graphgraph_fdfitFit FD Curve

graph_filter

Version: 0.3
Authors: Daniil Bratashov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov (dn2010) 2012

Description: Remove graph noise by filtering. (User guide)

Functions
TypeNameInformation
graphgraph_filterFilter

graph_fit

Version: 2.10
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Fit graph with function (User guide)

Functions
TypeNameInformation
graphgraph_fitFit Function

graph_level

Version: 1.4
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Level graph by line. (User guide)

Functions
TypeNameInformation
graphgraph_levelLevel

graph_logscale

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Physically transforms graph data to logarithmic scale. (User guide)

Functions
TypeNameInformation
graphgraph_logscaleLogscale transform

graph_peaks

Version: 1.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Finds peaks on graph curves. (User guide)

Functions
TypeNameInformation
graphgraph_peaksFind Peaks

graph_stats

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2017

Description: Calculates simple graph curve statistics. (User guide)

Functions
TypeNameInformation
graphgraph_statsStatistics

gsffile

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2010

Description: Reads and exports Gwyddion Simple Field files. (User guide)

Functions
TypeNameInformation
filegsffileGwyddion Simple Field (.gsf)

gwyfile

Version: 0.18
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Loads and saves Gwyddion native data files (serialized objects). (User guide)

Functions
TypeNameInformation
filegwyfileGwyddion native format (.gwy)

gxyzffile

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2013

Description: Imports Gwyddion XYZ field files. (User guide)

Functions
TypeNameInformation
filegxyzfileGwyXYZ data files

hdf4file

Version: 0.7
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports Hierarchical Data Format (HDF) files, version 4. (User guide)

Functions
TypeNameInformation
filepsifilePsi HDF4 files (.hdf)

hdrimage

Version: 2.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports 16bit grayscale PPM, PNG and TIFF images, imports and exports OpenEXR images (if available). (User guide)

Functions
TypeNameInformation
fileopenexrOpenEXR images (.exr)
filepng16PNG images with 16bit depth (.png)
filepgm16PGM images with 16bit depth (.pgm)
filetiffbigTIFF and BigTIFF images with high depth (.tiff)

hitachi-afm

Version: 0.7
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek & Markus Pristovsek 2005

Description: Imports Hitachi AFM files. (User guide)

Functions
TypeNameInformation
filehitachi-afmHitachi AFM files (.afm)
filehitachi-afm-oldHitachi AFM files, old (.afm)

hitachi-sem

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports Hitachi S-3700 and S-4800 SEM files. (User guide)

Functions
TypeNameInformation
filehitachi-semHitachi SEM files (.txt + image)

hough

Version: 1.3
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Hough transform.

Functions
TypeNameInformation
prochoughIntegral Transforms → Hough

icolorange

Version: 3.17
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Interactive color range tool, allows selecting the data range false color scale should map to, either on data or on height distribution histogram. (User guide)

Functions
TypeNameInformation
toolGwyToolColorRangeStretch color range to part of data

igorfile

Version: 0.10
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports Igor binary waves (.ibw). (User guide)

Functions
TypeNameInformation
fileigorfileIgor binary waves (.ibw)

imgexport

Version: 2.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Renders data into vector (SVG, PDF, EPS) and pixmap (PNG, JPEG, TIFF, WebP, PPM, BMP, TARGA) images. Export to some formats relies on GDK and other libraries thus may be installation-dependent. (User guide)

Functions
TypeNameInformation
filepngcairoPortable Network Graphics (.png)
filejpegcairoJPEG (.jpeg,.jpg)
filetiffcairoTIFF (.tiff,.tif)
filepnmcairoPortable Pixmap (.ppm,.pnm)
filebmpcairoWindows or OS2 Bitmap (.bmp)
filetgacairoTARGA (.tga,.targa)
filewebpcairoWebP (.webp)
filepdfcairoPortable document format (.pdf)
fileepscairoEncapsulated PostScript (.eps)
filesvgcairoScalable Vector Graphics (.svg)

immerse

Version: 2.6
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Immerse high resolution detail into overall image. (User guide)

Functions
TypeNameInformation
procimmerseMultidata → Immerse Detail

indent_analyze

Version: 0.1.5
Authors: Lukáš Chvátal
Copyright: Lukáš Chvátal 2005

Description: Analyses nanoindentation structure (volumes, surfaces, ...).

Functions
TypeNameInformation
procindent_analyzeTip and Indentation → Analyze Imprint

intelliwave

Version: 0.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Imports IntelliWave interferometric ESD data. (User guide)

Functions
TypeNameInformation
fileintelliwaveIntelliWave interferometric data (.esd)

intematix

Version: 0.4
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports Intematix SDF data files. (User guide)

Functions
TypeNameInformation
fileintematixIntematix SDF data files (.sdf)

iso28600

Version: 0.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports and exports ISO 28600:2011 SPM data transfer format. (User guide)

Functions
TypeNameInformation
fileiso28600ISO 28600:2011 SPM data transfer files (.spm)

jeol

Version: 0.8
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports JEOL data files. (User guide)

Functions
TypeNameInformation
filejeolJEOL data files (.tif)

jpkscan

Version: 0.10
Authors: Sven Neumann, Yeti
Copyright: JPK Instruments AG, David Nečas (Yeti) 2005-2007

Description: Imports JPK image scans. (User guide)

Functions
TypeNameInformation
filejpkscanJPK image scans (.jpk, .jpk-qi-image)
filejpkforceJPK force curves (.jpk-force, .jpk-force-map, .jpk-qi-data)

jspmfile

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Imports JEOL JSPM data files. (User guide)

Functions
TypeNameInformation
filejspmfileJEOL JSPM data files (.tif)

keyence

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Imports Keyence VK4 files. (User guide)

Functions
TypeNameInformation
filekeyenceKeyence VK4 data files (.vk4)

laplace

Version: 2.0
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Removes data under mask, interpolating them with Laplace equation solution. (User guide)

Functions
TypeNameInformation
proclaplaceCorrect Data → Remove Data Under Mask

lat_synth

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Generates surfaces based on regular or random lattices. (User guide)

Functions
TypeNameInformation
proclat_synthSynthetic → Lattice

latsim

Version: 1.2
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2012

Description: Lateral force simulator

Functions
TypeNameInformation
proclatsimTip and Indentation → Lateral force

lattice

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2013

Description: Layer allowing selection of a two-dimensional lattice. (User guide)

Functions
TypeNameInformation
layerGwyLayerLattice

leica

Version: 0.2
Authors: Daniil Bratashov
Copyright: Daniil Bratashov (dn2010), David Necas (Yeti) 2016

Description: Imports Leica CLSM image files (LIF). (User guide)

Functions
TypeNameInformation
fileleicaLeica LIF image files (.lif)

level

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Levels data by simple plane subtraction or by rotation, and fixes minimal or mean value to zero. (User guide)

Functions
TypeNameInformation
proclevelLevel → Plane Level
proclevel_rotateLevel → Level Rotate
procfix_zeroLevel → Fix Zero
proczero_meanLevel → Zero Mean Value

level3

Version: 2.8
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Three-point level tool, levels data by subtracting a plane fitted through three selected points. (User guide)

Functions
TypeNameInformation
toolGwyToolLevel3Level data by fitting a plane through three points

level_grains

Version: 1.3
Authors: David Nečas
Copyright: David Nečas (Yeti) 2011

Description: Levels individual grains, interpolating the shifts between using Laplacian interpolation. (User guide)

Functions
TypeNameInformation
proclevel_grainsGrains → Level Grains

lextfile

Version: 0.5
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2010

Description: Imports LEXT data files. (User guide)

Functions
TypeNameInformation
filelextOlympus LEXT OLS4000 (.lext)

line

Version: 3.5
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Layer allowing selection of arbitrary straight lines. (User guide)

Functions
TypeNameInformation
layerGwyLayerLine

linecorrect

Version: 1.10
Authors: Yeti, Luke Somers
Copyright: David Nečas (Yeti) & Petr Klapetek & Luke Somers 2004

Description: Corrects line defects (mostly experimental algorithms). (User guide)

Functions
TypeNameInformation
procline_correct_stepCorrect Data → Step Line Correction

linematch

Version: 1.5
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Aligns rows by various methods. (User guide)

Functions
TypeNameInformation
procalign_rowsCorrect Data → Align rows

linestats

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Row/column statistical function tool, mean values, medians, maxima, minima, RMS, ..., of rows or columns. (User guide)

Functions
TypeNameInformation
toolGwyToolLineStatsCalculate row/column statistical functions

lno_synth

Version: 1.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2010

Description: Generates various kinds of line noise. (User guide)

Functions
TypeNameInformation
proclno_synthSynthetic → Line Noise

local_contrast

Version: 1.4
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Maximizes local contrast. (User guide)

Functions
TypeNameInformation
proclocal_contrastPresentation → Local Contrast

logistic

Version: 0.3
Authors: Daniil Bratashov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov 2016

Description: Trains logistic regression to mark grains. (User guide)

Functions
TypeNameInformation
proclogistic_regressionGrains → Logistic Regression

magellan

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2013

Description: Imports FEI Magellan SEM images. (User guide)

Functions
TypeNameInformation
filemagellanFEI Magellan SEM image (.tif)

mapvue

Version: 0.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports MapVue data files (.map). (User guide)

Functions
TypeNameInformation
filemapvueMapVue files (.map)

mark_disconn

Version: 1.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Creates mask of values disconnected to the rest. (User guide)

Functions
TypeNameInformation
procmark_disconnCorrect Data → Mask of Disconnected

mark_with

Version: 1.5
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Creates or modifies a mask using other channels. (User guide)

Functions
TypeNameInformation
procmark_withMask → Mark With

mask_distribute

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Distributes masks to other channels. (User guide)

Functions
TypeNameInformation
procmask_distributeMask → Distribute

mask_edt

Version: 2.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Performs simple and true Euclidean distance transforms of masks. (User guide)

Functions
TypeNameInformation
procmask_edtMask → Distance Transform
procmask_thinMask → Thin

mask_morph

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Performs basic morphological operations with masks. (User guide)

Functions
TypeNameInformation
procmask_morphMask → Morphological Operation

mask_noisify

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2017

Description: Adds salt and/or pepper noise to mask. (User guide)

Functions
TypeNameInformation
procmask_noisifyMask → Noisify

maskcor

Version: 1.9
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Creates mask by correlation with another data. (User guide)

Functions
TypeNameInformation
procmaskcorMultidata → Mask by Correlation

maskedit

Version: 3.11
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Mask editor tool, allows interactive modification of parts of the mask. (User guide)

Functions
TypeNameInformation
toolGwyToolMaskEditorEdit mask

maskops

Version: 1.5
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Basic operations with mask: inversion, removal, extraction. (User guide)

Functions
TypeNameInformation
procmask_removeMask → Remove Mask
procmask_invertMask → Invert Mask
procmask_extractMask → Extract Mask
procgrain_rem_touchingGrains → Remove Edge-Touching

mcrop

Version: 0.4
Authors: Daniil Bratashov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov 2010

Description: Crops non-intersecting regions of two images. (User guide)

Functions
TypeNameInformation
procmcropMultidata → Mutual Crop

measure_lattice

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Measures parameters of two-dimensional lattices. (User guide)

Functions
TypeNameInformation
procmeasure_latticeStatistics → Measure Lattice

median-bg

Version: 1.6
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Subtracts background using a rank-based algorithm. (User guide)

Functions
TypeNameInformation
procmedian-bgLevel → Median Level

merge

Version: 3.2
Authors: Petr Klapetek, Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Merges two images. (User guide)

Functions
TypeNameInformation
procmergeMultidata → Merge

metropro

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports binary MetroPro (Zygo) data files. (User guide)

Functions
TypeNameInformation
filemetroproMetroPro files (.dat)

mfm_current

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2017

Description: Simulation of current line magnetic field (User guide)

Functions
TypeNameInformation
procmfm_currentSPM Modes → MFM → Current Line Field

mfm_field

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2017

Description: Simulation of magnetic field above perpendicular media (User guide)

Functions
TypeNameInformation
procmfm_fieldSPM Modes → MFM → Perpendicular Media Field

mfm_findshift

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2017

Description: Lift height difference estimation from data blur (User guide)

Functions
TypeNameInformation
procmfm_findshiftSPM Modes → MFM → Estimate Shift in Z

mfm_parallel

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2017

Description: Simulation of parallel magnetic media (User guide)

Functions
TypeNameInformation
procmfm_parallelSPM Modes → MFM → Parallel Media Field

mfm_shift

Version: 1.0
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2017

Description: Simulation of magnetic field z component change for another level (User guide)

Functions
TypeNameInformation
procmfm_shiftSPM Modes → MFM → Field Shift in Z

microprof

Version: 0.6
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports MicroProf FRT profilometer data files. (User guide)

Functions
TypeNameInformation
filemicroprofMicroProf FRT files (.frt)
filemicroprof_txtMicroProf FRT text files (.txt)

miffile

Version: 0.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2010

Description: Imports DME MIF data files. (User guide)

Functions
TypeNameInformation
filemiffileDME MIF files (.mif)

mifile

Version: 0.16
Authors: Chris Anderson
Copyright: Chris Anderson, Molecular Imaging Corp. 2006

Description: Imports Molecular Imaging MI data files. (User guide)

Functions
TypeNameInformation
filemifilePicoView Data Files (.mi)

mulfile

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports Aarhus MUL files. (User guide)

Functions
TypeNameInformation
filemulfileAarhus MUL files (.mul)

nanoeducator

Version: 0.6
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports Nanoeducator data files. (User guide)

Functions
TypeNameInformation
filenanoeducatorNanoeducator files (.mspm, .spm, .stm)

nanomagnetics

Version: 1.2
Authors: Sameer Grover
Copyright: Sameer Grover, Tata Institute of Fundamental Research 2012

Description: Imports Nanomagnetics' NMI file format version 3 and 5 (User guide)

Functions
TypeNameInformation
filenanomagneticsNanomagnetics File (.nmi)

nanonics

Version: 0.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports Nanonics NAN data files. (User guide)

Functions
TypeNameInformation
filenanonicsNanonics files (.nan)

nanonis

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports Nanonis SXM data files. (User guide)

Functions
TypeNameInformation
filenanonisNanonis SXM files (.sxm)

nanoobserver

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2012

Description: Reads Nano-Solution/NanoObserver .nao files. (User guide)

Functions
TypeNameInformation
filenanoobserverNano-Solution → NanoObserver data (.nao)

nanoscan

Version: 0.7
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports NanoScan XML files. (User guide)

Functions
TypeNameInformation
filenanoscanNanoScan XML files (.xml)

nanoscantech

Version: 0.12
Authors: Daniil Bratashov (dn2010@gmail.com)
Copyright: David Nečas (Yeti), Daniil Bratashov (dn2010), Antony Kikaxa 2012

Description: Imports NanoScanTech .nstdat files. (User guide)

Functions
TypeNameInformation
filenanoscantechNanoScanTech data (.nstdat)

nanoscope

Version: 0.35
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Imports Veeco (Digital Instruments) Nanoscope data files, version 3 or newer. (User guide)

Functions
TypeNameInformation
filenanoscopeNanoscope III files

nanoscope-ii

Version: 0.3
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2007

Description: Imports Digital Instruments Nanoscope II data files. (User guide)

Functions
TypeNameInformation
filenanoscope-iiNanoscope II files

nanotop

Version: 1.9
Authors: Alexander Kovalev
Copyright: Alexander Kovalev, Metal-Polymer Research Institute 2006

Description: Imports NANOTOP AFM files (User guide)

Functions
TypeNameInformation
filenanotopNanotop files (.spm)

netcdf

Version: 0.8
Authors: Yeti
Copyright: David Nečas (Yeti), Petr Klapetek & Niv Levy 2006

Description: Imports network Common Data Form (netCDF) files created by GXSM. (User guide)

Functions
TypeNameInformation
filegsxmfileGSXM netCDF files (.nc)

neural

Version: 2.3
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2012

Description: Neural network SPM data processing (User guide)

Functions
TypeNameInformation
procneural_trainMultidata → Neural Network Training
procneural_applyMultidata → Apply Neural Network

nmmxyz

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Imports Nano Measuring Machine profile files. (User guide)

Functions
TypeNameInformation
filenmmxyzNano Measuring Machine files (*.dsc)

noise_synth

Version: 1.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2010

Description: Generates uncorrelated random noise. (User guide)

Functions
TypeNameInformation
procnoise_synthSynthetic → Noise

nrrdfile

Version: 0.6
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports and exports nearly raw raster data (NRRD) files. (User guide)

Functions
TypeNameInformation
filenrrdfileNearly raw raster data (NRRD) files (.nrrd)

nt-mdt

Version: 0.23
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Imports NT-MDT data files. (User guide)

Functions
TypeNameInformation
filent-mdtNT-MDT files (.mdt)

nxiifile

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Imports EM4SYS data files. (User guide)

Functions
TypeNameInformation
filenxiifileEM4SYS NX II files (.bmp)

obj_synth

Version: 1.8
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Generates randomly patterned surfaces by placing objects. (User guide)

Functions
TypeNameInformation
procobj_synthSynthetic → Deposition → Objects

oldmda

Version: 0.3
Authors: dn2010
Copyright: David Nečas (Yeti) & Daniil Bratashov (dn2010) 2012

Description: Imports old NTMDT MDA Spectra files. (User guide)

Functions
TypeNameInformation
fileoldmdaNTMDT old MDA Spectra data (.sxml .dat)

ols

Version: 0.11
Authors: Jan Hořák, Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2008

Description: Imports OLS data files. (User guide)

Functions
TypeNameInformation
fileolsOlympus LEXT OLS3000 (.ols)

ometiff

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2013

Description: Imports OME-TIFF data files. (User guide)

Functions
TypeNameInformation
fileometiffOpen Microscopy OME-TIFF (.ome.tiff)

omicron

Version: 0.14
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek & Markus Pristovsek 2006

Description: Imports Omicron data files (two-part .par + .tf*, .tb*, .sf*, .sb*). (User guide)

Functions
TypeNameInformation
fileomicronOmicron files (.par + data)

omicronflat

Version: 2.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Imports Omicron flat files. (User guide)

Functions
TypeNameInformation
fileomicronflatOmicron flat files (*.*flat)

omicronmatrix

Version: 0.84
Authors: Philipp Rahe
Copyright: Philipp Rahe 2008

Description: Omicron MATRIX (param.mtrx & data.mtrx) (User guide)

Functions
TypeNameInformation
fileomicronmatrixOmicron MATRIX (.mtrx & .mtrx)

opdfile

Version: 0.11
Authors: Yeti
Copyright: David Nečas (Yeti) 2008

Description: Imports Wyko OPD and ASC files. (User guide)

Functions
TypeNameInformation
fileopdfileWyko OPD files (.opd)
fileopdfile-ascWyko ASCII export files (.asc)

opengps

Version: 1.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Reads ISO 5436-2 OpenGPS .x3p files. (User guide)

Functions
TypeNameInformation
fileopengpsISO 5436-2 OpenGPS data (.x3p)

otsu_threshold

Version: 1.2
Authors: Vinicius Barboza
Copyright: Brazilian Nanotechnology National Laboratory 2013

Description: Automated threshold using Otsu's method on heights. (User guide)

Functions
TypeNameInformation
procotsu-thresholdGrains → Mark by Otsu's

outliers

Version: 1.5
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Creates mask of outliers. (User guide)

Functions
TypeNameInformation
procoutliersCorrect Data → Mask of Outliers

pat_synth

Version: 1.6
Authors: Yeti
Copyright: David Nečas (Yeti) 2010

Description: Generates surfaces representing simple patterns (steps, ridges, ...). (User guide)

Functions
TypeNameInformation
procpat_synthSynthetic → Pattern

path

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Layer allowing selection of a single long curve. (User guide)

Functions
TypeNameInformation
layerGwyLayerPath

pathlevel

Version: 1.9
Authors: Yeti
Copyright: David Nečas (Yeti) 2007

Description: Path level tool, performs row leveling along on user-set lines. (User guide)

Functions
TypeNameInformation
toolGwyToolPathLevelLevel rows using intersections with given lines

phase_synth

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2017

Description: Generates phase-separated structures. (User guide)

Functions
TypeNameInformation
procphase_synthSynthetic → Phases

pid

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2012

Description: A simple PID simulator

Functions
TypeNameInformation
procpidTip and Indentation → PID simulation

pixmap

Version: 8.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2004-2014

Description: Imports data from low-depth pixmap images (PNG, TIFF, JPEG, ...). The set of available formats depends on available GDK pixbuf loaders. (User guide)

Functions
TypeNameInformation
filepngPortable Network Graphics (.png)
filebmpWindows or OS2 Bitmap (.bmp)
filejpegJPEG (.jpeg,.jpg)
filepnmPortable Pixmap (.ppm,.pnm)
filexpmX Pixmap (.xpm)
filetgaTARGA (.tga,.targa)
filejpeg2000JPEG 2000 (.jpx)
filetiffTIFF (.tiff,.tif)
fileicnsApple icon (.icns)
filegifGraphics Interchange Format GIF (.gif)

pltfile

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports Nanosurf PLT files. (User guide)

Functions
TypeNameInformation
filepltfileNanosurf PLT files (.plt)

plugin-proxy

Version: 3.9
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Plug-in proxy is a module capable of querying, registering, and running external programs (plug-ins) on data pretending they are data processing or file loading/saving modules. (User guide)

pnifile

Version: 0.7
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports Pacific Nanotechnology PNI data files. (User guide)

Functions
TypeNameInformation
filepnifilePNI files (.pni)

point

Version: 3.2
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Layer allowing selection of several points, displayed as crosses or invisible. (User guide)

Functions
TypeNameInformation
layerGwyLayerPoint

polydistort

Version: 1.5
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2007

Description: Applies polynomial distortion in the horizontal plane. (User guide)

Functions
TypeNameInformation
procpolydistortDistortion → Polynomial

polylevel

Version: 3.3
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Subtracts polynomial background. (User guide)

Functions
TypeNameInformation
procpolylevelLevel → Polynomial Background

presentationops

Version: 1.9
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Basic operations with presentation: extraction, removal. (User guide)

Functions
TypeNameInformation
procpresentation_removePresentation → Remove Presentation
procpresentation_extractPresentation → Extract Presentation
procpresentation_attachPresentation → Attach Presentation
procpresentation_logscalePresentation → Logscale

princetonspe

Version: 0.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Princeton Instruments camera SPE files. (User guide)

Functions
TypeNameInformation
fileprincetonspePrinceton Instruments SPE files

profile

Version: 4.0
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Profile tool, creates profile graphs from selected lines. (User guide)

Functions
TypeNameInformation
toolGwyToolProfileExtract profiles

psdf_logphi

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Two-dimensional FFT (Fast Fourier Transform) transformed to coordinates (log-frequency, angle). (User guide)

Functions
TypeNameInformation
procpsdf_logphiStatistics → Log-Phi PSDF

psf

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2017

Description: Point spread function estimation (User guide)

Functions
TypeNameInformation
procpsfStatistics → PSF Guess

psf-fit

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2017

Description: Point spread function estimation by fitting explicit function form. (User guide)

Functions
TypeNameInformation
procpsf-fitStatistics → PSF Fit

psia

Version: 0.7
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports Park Systems data files. (User guide)

Functions
TypeNameInformation
filepsiaPark Systems data files (.tiff, .tif)

pt3file

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports SymPhoTime data files, version 2.0. (User guide)

Functions
TypeNameInformation
filept3filePicoHarp files (.pt3)

pygwy

Version: 2.3
Authors: Jan Hořák, Yeti
Copyright: Jan Hořák & David Nečas (Yeti) 2007

Description: Pygwy, the Gwyddion Python wrapper. (User guide)

quesant

Version: 0.5
Authors: Jan Hořák, Yeti
Copyright: David Nečas (Yeti) & Jan Hořák 2008

Description: Imports Quesant file format. (User guide)

Functions
TypeNameInformation
filequesantQuesant files (.afm)

rank

Version: 2.2
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2014

Description: Enhances local contrast using a rank transform. (User guide)

Functions
TypeNameInformation
procrankPresentation → Rank

rawfile

Version: 2.10
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Imports raw data files, both ASCII and binary, according to user-specified format. (User guide)

Functions
TypeNameInformation
filerawfileRaw data files

rawgraph

Version: 0.5
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports simple text files as graph curves. (User guide)

Functions
TypeNameInformation
filerawgraphASCII graph curve files

rawxyz

Version: 3.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports raw XYZ data files. (User guide)

Functions
TypeNameInformation
filerawxyzXYZ data files

readvalue

Version: 2.14
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Pointer tool, reads value under pointer. (User guide)

Functions
TypeNameInformation
toolGwyToolReadValueRead value under mouse cursor

rectangle

Version: 2.9
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Layer allowing selection of rectangular areas. (User guide)

Functions
TypeNameInformation
layerGwyLayerRectangle

renishaw

Version: 0.9
Authors: Daniil Bratashov
Copyright: Daniil Bratashov (dn2010), David Necas (Yeti), Renishaw plc. 2014

Description: Imports Renishaw WiRE data files (WDF). (User guide)

Functions
TypeNameInformation
filerenishawRenishaw WiRE data files (.wdf)

rhk-sm3

Version: 0.15
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports RHK Technology SM3 data files. (User guide)

Functions
TypeNameInformation
filerhk-sm3RHK SM3 files (.sm3)

rhk-sm4

Version: 0.7
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports RHK Technology SM4 data files. (User guide)

Functions
TypeNameInformation
filerhk-sm4RHK SM4 files (.sm4)

rhk-spm32

Version: 0.11
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek, mod by Niv Levy 2007

Description: Imports RHK Technology SPM32 data files. (User guide)

Functions
TypeNameInformation
filerhk-spm32RHK SPM32 files (.sm2)

robotics

Version: 0.2
Authors: Mira
Copyright: Miroslav Valtr 2011

Description: Imports Automation & Robotics Dual Lensmapper data files (User guide)

Functions
TypeNameInformation
fileroboticsDual Lensmapper files

rotate

Version: 2.2
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Rotates data by arbitrary angle. (User guide)

Functions
TypeNameInformation
procrotateBasic Operations → Rotate by Angle

roughness

Version: 1.15
Authors: Martin Hasoň, Yeti
Copyright: Martin Hasoň & David Nečas (Yeti) 2006

Description: Calculate surface profile parameters. (User guide)

Functions
TypeNameInformation
toolGwyToolRoughnessCalculate roughness parameters

s94file

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2013

Description: Imports S94 STM data files. (User guide)

Functions
TypeNameInformation
files94fileS94 STM files (.s94)

scale

Version: 1.8
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek & Dirk Kähler 2003

Description: Scales data by arbitrary factor. (User guide)

Functions
TypeNameInformation
procscaleBasic Operations → Scale

scars

Version: 1.15
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Marks and/or removes scars (horizontal linear artifacts). (User guide)

Functions
TypeNameInformation
procscars_markCorrect Data → Mark Scars
procscars_removeCorrect Data → Remove Scars

sdfile

Version: 0.12
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports Surfstand group SDF (Surface Data File) files. (User guide)

Functions
TypeNameInformation
filesdfile-binSurfstand SDF files, binary (.sdf)
filesdfile-txtSurfstand SDF files, text (.sdf)
filemicromapMicromap SDF files (.sdfa)

seiko

Version: 0.13
Authors: Yeti
Copyright: David Nečas (Yeti) & Markus Pristovsek 2006

Description: Imports Seiko XQB, XQD, XQT and XQP files. (User guide)

Functions
TypeNameInformation
fileseikoSeiko files (.xqb, .xqd, .xqt, .xqp)

selectionmanager

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Grain removal tool, removes continuous parts of mask and/or underlying data. (User guide)

Functions
TypeNameInformation
toolGwyToolSelectionManagerDisplay, copy and export selections

semsim

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Simple SEM image simulation from topography. (User guide)

Functions
TypeNameInformation
procsemsimPresentation → SEM Image

sensofar

Version: 0.4
Authors: Jan Hořák, Yeti
Copyright: David Nečas (Yeti) & Jan Hořák 2008

Description: Imports Sensofar PLu file format, version 2000 or newer. (User guide)

Functions
TypeNameInformation
filesensofarSensofar PLu files (.plu)

sensofarx

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Reads Sensofar PLUx files. (User guide)

Functions
TypeNameInformation
filesensofarxSensofar PLUx files (.plux)

sensolytics

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports Sensolytics text files. (User guide)

Functions
TypeNameInformation
filesensolyticsSensolytics text files (.dat)

sfunctions

Version: 2.18
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Statistical function tool, calculates one-dimensional statistical functions (height distribution, correlations, PSDF, Minkowski functionals) of selected part of data. (User guide)

Functions
TypeNameInformation
toolGwyToolSFunctionsCalculate 1D statistical functions

shade

Version: 2.6
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Creates a shaded presentation of data. (User guide)

Functions
TypeNameInformation
procshadePresentation → Shading

shimadzu

Version: 0.6
Authors: Yeti
Copyright: David Nečas (Yeti) 2007

Description: Imports Shimadzu SPM data files. (User guide)

Functions
TypeNameInformation
fileshimadzuShimadzu files

sicmfile

Version: 1.3
Authors: Matthew Caldwell
Copyright: Matthew Caldwell 2007-2010

Description: Imports IonScope SICM data files. (User guide)

Functions
TypeNameInformation
filesicmIonScope SICM files (.img)

sis

Version: 0.17
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Imports SIS (Surface Imaging Systems) data files. (User guide)

Functions
TypeNameInformation
filesisSIS files (.sis)

slope_dist

Version: 2.3
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Calculates one- or two-dimensional distribution of slopes or graph of their angular distribution. (User guide)

Functions
TypeNameInformation
procslope_distStatistics → Slope Distribution

spectro

Version: 0.11
Authors: Owain Davies
Copyright: Owain Davies, David Nečas (Yeti) & Petr Klapetek 2006

Description: Point Spectrum, extracts point spectra to a graph. (User guide)

Functions
TypeNameInformation
toolGwyToolSpectroExtract and view point spectroscopy data

sphere-revolve

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Subtracts background by arc or sphere revolution. (User guide)

Functions
TypeNameInformation
procarc_revolveLevel → Revolve Arc
procsphere_revolveLevel → Revolve Sphere

spip-asc

Version: 0.5
Authors: Yeti
Copyright: David Nečas (Yeti) 2009

Description: Imports SPIP ASC files. (User guide)

Functions
TypeNameInformation
filespip-ascSPIP ASCII files (.asc)

spml

Version: 0.1.6
Authors: Jan Hořák
Copyright: Jan Hořák 2006

Description: Loads SPML (Scanning Probe Microscopy Markup Language) data files. (User guide)

Functions
TypeNameInformation
filespmlSPML files (.xml)

spmlab

Version: 0.12
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports Thermicroscopes SpmLab R3 to R7 data files. (User guide)

Functions
TypeNameInformation
filespmlabThermicroscopes SpmLab files

spmlabf

Version: 0.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2008

Description: Imports SPMLab floating-point files. (User guide)

Functions
TypeNameInformation
filespmlabfSPMLab floating-point files (.flt)

spmxfile

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Reads ATC SPMxFormat files. (User guide)

Functions
TypeNameInformation
filespmxfileATC SPMxFormat data (.spm)

spotremove

Version: 2.8
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Spot removal tool, interpolates small parts of data (displayed on a zoomed view) using selected algorithm. (User guide)

Functions
TypeNameInformation
toolGwyToolSpotRemoverInterpolate small defects, manually selected

stats

Version: 2.18
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2003

Description: Statistics tool. (User guide)

Functions
TypeNameInformation
toolGwyToolStatsStatistical quantities

stitch

Version: 2.48
Authors: Petr Grolich
Copyright: Petr Klapetek & Petr Grolich 2017

Description: Stitch multiple images based on offsets of origins.

Functions
TypeNameInformation
procstitchMultidata → Stitch

stmprg

Version: 0.12
Authors: Rok Zitko, Yeti
Copyright: Rok Zitko & David Nečas (Yeti) 2004

Description: Imports Omicron STMPRG data files (tp ta). (User guide)

Functions
TypeNameInformation
filestmprgOmicron STMPRG files (tp ta)

stpfile

Version: 0.5.2
Authors: Yeti
Copyright: David Nečas (Yeti), Petr Klapetek, Chris Anderson 2006

Description: Imports Molecular Imaging STP data files. (User guide)

Functions
TypeNameInformation
filestpfileSTP files (.stp)

straighten_path

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Extracts a straightened part of image along a curve. (User guide)

Functions
TypeNameInformation
procstraighten_pathDistortion → Straighten Path

surffile

Version: 0.11
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Imports Surf data files. (User guide)

Functions
TypeNameInformation
filesurffileSurf files (.sur)

tescan

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2013

Description: Imports Tescan SEM images. (User guide)

Functions
TypeNameInformation
filetescanTescan MIRA SEM image (.tif)

threshold

Version: 1.5
Authors: Yeti
Copyright: David Nečas (Yeti) 2010

Description: Limit the data range using a lower/upper threshold. (User guide)

Functions
TypeNameInformation
procthresholdBasic Operations → Limit range

tiaser

Version: 0.4
Authors: dn2010
Copyright: David Nečas (Yeti), Daniil Bratashov (dn2010) 2012

Description: Imports FEI Tecnai imaging and analysis (former Emispec) files. (User guide)

Functions
TypeNameInformation
filetiaserFEI TIA (Emispec) data

tilt

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2008

Description: Tilts image by specified amount. (User guide)

Functions
TypeNameInformation
proctiltBasic Operations → Tilt

tip_blind

Version: 1.9
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Blind estimation of SPM tip using Villarubia's algorithm. (User guide)

Functions
TypeNameInformation
proctip_blindTip and Indentation → Blind Estimation

tip_model

Version: 2.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Models SPM tip. (User guide)

Functions
TypeNameInformation
proctip_modelTip and Indentation → Model Tip

tipops

Version: 1.3
Authors: Petr Klapetek, Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2006

Description: Tip operations: dilation (convolution), erosion (reconstruction) and certainty map. (User guide)

Functions
TypeNameInformation
proctip_dilationTip and Indentation → Dilation
proctip_reconstructionTip and Indentation → Surface Reconstruction
proctip_mapTip and Indentation → Certainty Map

unisoku

Version: 0.9
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports Unisoku data files (two-part .hdr + .dat). (User guide)

Functions
TypeNameInformation
fileunisokuUnisoku files (.hdr + .dat)

unrotate

Version: 2.6
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2004

Description: Rotates data to make characteristic directions parallel with x or y axis. (User guide)

Functions
TypeNameInformation
procunrotateCorrect Data → Unrotate

volume_calibrate

Version: 1.2
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2013

Description: Recalibrate volume data dimensions or value range. (User guide)

Functions
TypeNameInformation
volumevolcal

volume_extract

Version: 1.2
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2013

Description: Shows and/or extracts a section of volume data (User guide)

Functions
TypeNameInformation
volumeextract

volume_fdfit

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2013

Description: Evaluate volume force-distance data (User guide)

Functions
TypeNameInformation
volumevolume_fdfit

volume_invert

Version: 1.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2013

Description: Inverts value in volume data (User guide)

Functions
TypeNameInformation
volumevolume_invert

volume_kmeans

Version: 1.5
Authors: Daniil Bratashov & Evgeniy Ryabov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov & Evgeniy Ryabov 2014

Description: Calculates K-means clustering on volume data. (User guide)

Functions
TypeNameInformation
volumekmeans

volume_kmedians

Version: 1.2
Authors: Daniil Bratashov & Evgeniy Ryabov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov & Evgeniy Ryabov 2014

Description: Calculates K-medians clustering on volume data. (User guide)

Functions
TypeNameInformation
volumekmedians

volume_linestat

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Summarizes profiles of volume data to a channel. (User guide)

Functions
TypeNameInformation
volumevolume_linestat

volume_slice

Version: 2.3
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Extracts image planes and line graphs from volume data. (User guide)

Functions
TypeNameInformation
volumevolume_slice

volume_swaxes

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2017

Description: Swaps axes of volume data. (User guide)

Functions
TypeNameInformation
volumevolume_swaxes

volume_zcal

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Attaches, extracts and removes volume data z-axis calibration. (User guide)

Functions
TypeNameInformation
volumevolume_zcal

volumeops

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2017

Description: Inverts value in volume data (User guide)

Functions
TypeNameInformation
volumeextract_preview

volumize

Version: 1.2
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2013

Description: Converts datafield to 3D volume data. (User guide)

Functions
TypeNameInformation
procvolumizeBasic Operations → Volumize

volumize_layers

Version: 2.1
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2013

Description: Converts all datafields to 3D volume data. (User guide)

Functions
TypeNameInformation
procvolumize_layersBasic Operations → Volumize Layers

vtkfile

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2012

Description: Exports data as VTK structured grids. (User guide)

Functions
TypeNameInformation
filevtkVTK structured grid (.vtk)

wave_synth

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Generates various kinds of waves. (User guide)

Functions
TypeNameInformation
procwave_synthSynthetic → Waves

win_stm

Version: 0.5
Authors: Jeffrey J. Schwartz
Copyright: Jeffrey J. Schwartz April 2014

Description: Imports WinSTM (.stm) files. (User guide)

Functions
TypeNameInformation
filewin_stmWinSTM files (.stm)

wipfile

Version: 0.8
Authors: Daniil Bratashov
Copyright: David Nečas (Yeti) & Petr Klapetek & Daniil Bratashov 2010

Description: Imports WItec Project data files. (User guide)

Functions
TypeNameInformation
filewipfileWItec Project files (.wip)

witec-asc

Version: 0.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports WITec ASCII export files. (User guide)

Functions
TypeNameInformation
filewitec-ascWITec ASCII files (.dat)

witfile

Version: 0.7
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports WITec WIT data files. (User guide)

Functions
TypeNameInformation
filewitfileWITec files (.wit)

wpour_mark

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2014

Description: Segments image using watershed with pre- and postprocessing. (User guide)

Functions
TypeNameInformation
procwpour_markGrains → Mark by Segmentation

wsffile

Version: 0.4
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports WSF ASCII files. (User guide)

Functions
TypeNameInformation
filewsffileWSF ASCII files (.wsf)

wsxmfile

Version: 0.16
Authors: Yeti
Copyright: David Nečas (Yeti) & Petr Klapetek 2005

Description: Imports Nanotec WSxM data files. (User guide)

Functions
TypeNameInformation
filewsxmfileWSxM files (.tom, .stp)

xydenoise

Version: 1.3
Authors: Petr Klapetek
Copyright: David Nečas (Yeti) & Petr Klapetek 2012

Description: Denoises measurement on basis of two orthogonal scans. (User guide)

Functions
TypeNameInformation
procxydenoiseMultidata → XY denoise

xyz_drift

Version: 1.0
Authors: Petr Klapetek
Copyright: Petr Klapetek 2016

Description: Analyzes drift in XYZ data.

Functions
TypeNameInformation
xyzxyz_drift

xyz_level

Version: 1.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Simple XYZ data leveling. (User guide)

Functions
TypeNameInformation
xyzxyz_fix_zero
xyzxyz_zero_mean
xyzxyz_fixzero

xyz_raster

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Rasterizes XYZ data to images. (User guide)

Functions
TypeNameInformation
xyzxyz_raster

xyzexport

Version: 2.0
Authors: Yeti
Copyright: David Nečas (Yeti) 2015

Description: Exports data as simple XYZ text file. (User guide)

Functions
TypeNameInformation
filexyzexportXYZ text data (.xyz)

xyzize

Version: 1.2
Authors: Yeti
Copyright: David Nečas (Yeti) 2016

Description: Converts data fields to XYZ data. (User guide)

Functions
TypeNameInformation
procxyzizeBasic Operations → XYZize

zeiss

Version: 0.6
Authors: Yeti
Copyright: David Nečas (Yeti) 2011

Description: Imports Carl Zeiss SEM images. (User guide)

Functions
TypeNameInformation
filezeissCarl Zeiss SEM scans (.tif)

zeisslsm

Version: 0.3
Authors: Daniil Bratashov
Copyright: Daniil Bratashov (dn2010), David Nečas (Yeti) 2017

Description: Imports Carl Zeiss CLSM images. (User guide)

Functions
TypeNameInformation
filezeisslsmCarl Zeiss CLSM images (.lsm)

zemax

Version: 1.1
Authors: Yeti
Copyright: David Nečas (Yeti) 2013

Description: Imports Zemax grid sag data files. (User guide)

Functions
TypeNameInformation
filezemaxZemax grid sag data (.dat)
1.4 (yeti, 2014-06-08 11:10:03)
© David Nečas and Petr Klapetek

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